Table 2 Statistical analysis of repeat sequences in the GGX 413 genome
Repeat type | Number of elements | Length occupied (bp) | Percentage of genome (%) |
|---|---|---|---|
Interspersed repeats | |||
Retroelements | 1175 | 282,872 | 0.72 |
SINEs | 1 | 95 | 0.00 |
LINEs | 255 | 17,693 | 0.04 |
CRE/SLACS | 5 | 295 | 0.00 |
L2/CR1/Rex | 36 | 2316 | 0.01 |
R1/LOA/Jockey | 55 | 3982 | 0.01 |
R2/R4/NeSL | 10 | 645 | 0.00 |
RTE/Bov-B | 18 | 1129 | 0.00 |
L1/CIN4 | 40 | 2578 | 0.01 |
LTR elements | 919 | 265,084 | 0.67 |
BEL/Pao | 64 | 4798 | 0.01 |
Ty1/Copia | 189 | 17,195 | 0.04 |
Gypsy/DIRS1 | 597 | 238,312 | 0.60 |
Retroviral | 53 | 3409 | 0.01 |
Penelope | 22 | 1763 | 0.00 |
DNA transposons | 421 | 35,104 | 0.09 |
hobo-Activator | 106 | 8053 | 0.02 |
Tc1-IS630-Pogo | 37 | 3903 | 0.01 |
PiggyBac | 8 | 505 | 0.00 |
Tourist/Harbinger | 21 | 1727 | 0.00 |
Unclassified | 69 | 6500 | 0.02 |
Tandem repeats | |||
Satellites | 49 | 5002 | 0.01 |
Simple repeats | 41 | 4256 | 0.01 |
Low complexity | 4 | 449 | 0.00 |