From: QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs
Homo sapiens | Â | Mus musculus | ||||||
---|---|---|---|---|---|---|---|---|
Gene name | Biological relevance | mRNA (Ref seq) | QGRS location | QGRS sequence motif | Reference | mRNA (Ref seq) | mRNA similarity with human a (%) | QGRS conservation score |
LRP5 | Receptor-mediated endocytosis | NM_002335.2 | 3′-UTR (+136) | GGGGTGGGCAGGGCTGGG | Beaudoin et al. 2013 [64] | NM_008513.3 | 86 | 1.00 |
PIM1 | Cancer and apoptosis | NM_002648.3 | 3′-UTR (+279) | GGGGTGGGGGGTGGGGGTGGG | Arora and Suess 2011 [66] | NM_008842.3 | 52 | 1.00 |
IGF2 | Wilms' tumor | NM_001127598.1 | 3′-UTR (+2194) | GGGGTGGGTGGGGGGCAGTGGGGGCTGGGCGGGG | Christiansen et al. 1994 [65] | NM_010514.3 | 56 | 1.00 |
PSD95 | Synaptic junction formation | NM_001365.3 | 3′-UTR (+685) | GGGAGGGAGGGTGGG | Subramanian et al. 2011 [36] | NM_001109752.1 | 64 | 1.00 |
KISS1 | Metastasis suppression | NM_002256.3 | 3′-UTR (+53) | GGGGCGGGGGCGGGGGGCGGGGACGTAGGGCTAAGGGAGGGG | Huijbregts et al. 2012 [67] | NM_178260.3 | 49 | 0.706b |
NRAS | Rectal cancer | NM_002524.4 | 5′-UTR (-240) | GGGAGGGGCGGGTCTGGG | Kumari et al. 2007 [24] | NM_010937.2 | 64 | 1.00c |
ADAM10 | Anti-amyloidogenic activity | NM_001110.2 | 5′-UTR (-78) | GGGGACGGGTATGGGCGGG | Lammich et al. 2011 [31] | NM_007399.3 | 71 | 1.00c |
MECP2 | Rett syndrome/autism | NM_004992.3 | 5′-UTR (-108) | GGAGGAGGAGGAGGCGAGG | Bagga and D′Antonio 2013 [11] | NM_001081979.1 | 74 | 1.00 |
YY1 | Transcription | NM_003403.3 | 5′-UTR (-203) | GGGCGCGGGCGCACCGAGGCGAGGGAGGCGGG | Huang et al. 2011 [68] | NM_009537.3 | 89 | 0.944c |
TERF2 | Telomeric stabilization | NM_005652.2 | 5′-UTR (-20) | GGGAGGGCGGGGAGGG | Gomez et al. 2010 [69] | NM_001286200.1 | 65 | 1.00 |