Figure 4From: Validation and assessment of variant calling pipelines for next-generation sequencingEvaluation of the effect of sequencing parameters. Read depth (A), allele balance (B), and mapping quality (C) on the calling accuracy. We compared the accuracy and missing data rates of the sequencing calls after systematically varying these parameters using data from 100 subjects with valid genotype data from GWAS on 7,370 SNPs.Back to article page