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Table 5 Region 52a (Chromosome 22, 237.22 kb)

From: The impact of sample size and marker selection on the study of haplotype structures

Population B (African-Americ)†

# of blocks 9

total # of Tag SNPs 19

   

BlockID

NumTagSNP

StartPos

EndPos

BlockSize

NumHap

Block_0001

3

1

4

4

100

Block_0002

2

5

9

5

100

Block_0003

2

10

19

10

100

Block_0004

2

20

24

5

100

Block_0005

2

25

28

4

100

Block_0006

2

29

33

5

100

Block_0007

2

34

35

2

100

Block_0008

2

36

43

8

100

Block_0009

2

44

46

3

100

Tag SNP for block_0001

 

Tag SNP for block_0005

1

4

5

0.95825

27

29

0.91095

1

4

5

0.95825 - 1*

27

29

0.91095 - 1*

Tag SNP for block_0002

 

Tag SNP for block_0006

7

10

0.94339

 

31

33

0.90816

9

10

0.90594

 

32

33

0.90614

7

10

0.94339 - 1*

 

31

33

0.90816 - 1*

Tag SNP for block_0003

 

Tag SNP for block_0007

11

15

0.93446

 

36

37

1

11

17

0.93107

 

36

37

1 - 1*

11

18

0.93234

    

11

19

0.9346

 

Tag SNP for block_0008

15

20

0.92013

 

40

42

0.90181

17

20

0.91561

 

40

42

0.90181 - 1*

18

20

0.91455

    

19

20

0.92754

 

Tag SNP for block_0009

11

19

0.9346 2 1*

 

46

47

0.93096

    

46

48

0.92839

Tag SNP for block_0004

 

46

47

0.93096 - 1*

25

26

0.90927

    

25

26

0.90927 2 1*

    

Population C (Japanese & Chinese)†

   

# of blocks = 6

Total # of TagSNPs = 10

   

BlockID

NumTagSNP

StartPos

EndPos

BlockSize

NumHap

Block_0001

1

1

1

1

84

Block_0002

2

2

22

21

84

Block_0003

2

23

29

7

84

Block_0004

2

30

34

5

84

Block_0005

2

35

43

9

84

Block_0006

1

44

45

2

84

Tag SNP for block_0001

 

Tag SNP for block_0004

1

1.00000

  

32

36

0.90335

1

1.00000 - 1*

  

34

36

0.9073

    

34

36

0.9073 - 1*

Tag SNP for block_0002

    

7

15

0.96085

 

Tag SNP for block_0005

7

17

0.96085

 

37

39

0.93032

7

18

0.96085

 

37

40

0.92593

7

19

0.96085

 

39

46

0.93265

7

15

0.96085 - 1*

 

40

46

0.92716

    

39

46

0.93265 - 1*

Tag SNP for block_0003

    

25

27

0.92191

 

Tag SNP for block_0006

25

31

0.90516

 

48

0.95869

 

26

27

0.92676

 

48

0.95869 - 1*

 

26

31

0.91236

    

27

31

0.92645

    

26

27

0.92676 - 1*

    
  1. † Tag SNPs are in combined order.
  2. * - 1 lines indicate the Tag SNPs that scored the highest in each block by the HapBlock program.