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Table 1 Properties of simulated samples

From: Gametic phase estimation over large genomic regions using an adaptive window approach

Case

Data type

θ 1

R 2

L 3

Ï€ 4

 

SNP

    

1

 

5

40

25 [14-39]

4.8

2

 

5

100

25 [13-44]

4.8

3

 

5

200

25 [10-38]

4.9

4

 

10

40

49 [33-69]

9.9

5

 

10

100

48 [31-70]

9.6

6

 

10

200

48 [30-61]

9.6

7

 

20

40

90 [65-127]

18.3

8

 

20

100

90 [65-109]

18.7

9

 

20

200

89 [65-119]

18.5

 

STR

    

10

  

40

10

7.8

11

  

100

10

7.9

12

  

200

10

7.8

13

  

40

20

15.7

14

  

100

20

15.6

15

  

200

20

15.6

16

  

40

50

39.1

17

  

100

50

39.1

18

  

200

50

39.1

  1. 1. All simulations were performed in stationary random-mating populations. Samples consisted in 50 diploid individuals.
  2. 2. θ = 4Nu where N is the population size and u is the mutation rate per generation for the whole chromosomal segment.
  3. 3. R = 4Nr where r is the recombination rate for the whole chromosomal segment.
  4. 4. L is the number of polymorphic sites in the sample. For SNPs, we report the average number among 100 replicates, as well as the minimum and maximum numbers in brackets.
  5. 5. π is the average number of discordant sites between two gametes.